My issue it is similar: each "layer" of simulation would necessarily be far simpler than than the layer in which the simulation is built, and so complexity would drop down exponentially such that even an incredibly complex universe would not be able to support conscious beings in simulations within only a few layers. You could imagine that maybe the initial universe is so much more complex than our own that it could support millions of layers, but at that point you're just guessing, as we have no reason to believe there is even a single layer above our own, and the whole notion that "we're more likely to be an a simulation than not" just ceases to be true. You can't actually put a number on it, or even a vague description like "more likely." it's ultimately a guess.
I feel like there is a pretty big gap between understanding how logic gates and truth tables work and understanding the underlying physics of how modern processors work.