Any tips to help a scientist become a better programmer?
Hey there!
I'm a chemical physicist who has been using python (as well as matlab and R) for a lot of different tasks over the last ~10 years, mostly for data analysis but also to automate certain tasks. I am almost completely self-taught, and though I have gotten help and tips from professors throughout the completion of my degrees, I have never really been educated in best practices when it comes to coding.
I have some friends who work as developers but have a similar academic background as I do, and through them I have become painfully aware of how bad my code is. When I write code, it simply needs to do the thing, conventions be damned. I do try to read up on the "right" way to do things, but the holes in my knowledge become pretty apparent pretty quickly.
For example, I have never written a class and I wouldn't know why or where to start (something to do with the init method, right?). I mostly just write functions and scripts that perform the tasks that I need, plus some work with jupyter notebooks from time to time. I only recently got started with git and uploading my projects to github, just as a way to try to teach myself the workflow.
So, I would like to learn to be better. Can anyone recommend good resources for learning programming, but perhaps that are aimed at people who already know a language? It'd be nice to find a guide that assumes you already know more than a beginner. Any help would be appreciated.
All the other comments are great advice. As an ex chemist who does quite a bit of code I'll add:
Do you want code that works, or code that works?! It's reasonably easy to knock out ugly code that only works once, and that can be just what you need. It takes a little more effort however to make it robust. Think about how it can fail and trap the failures. If you're sharing code with others, this is even more important a people do 'interesting' things.
There's a lot of temporary code that's had a very long life in production, this has technical debt... Is it documented? Is it stable? Is it secure? Ideally it should be
Code examples on the first page of Google tend to work ok, but are not generally secure, e.g doing SQL queries instead of using prepared statements. Doesn't take much extra effort to do it properly and gives you peace of mind. We create sboms for our code now so we can easily check if a component has gained a vulnerability. Doesn't mean our code is good, but it helps. You don't really want to be the person who's code helped let an attacker in.
Any code you write, especially stuff you share will give you a support and maintenance task long term. Pirate for it!
Code sometimes just stops working. - at least I'm my experience. Sacrifice something to the gods and all will be fine.
Finally, you probably know more than you think. You've plenty of experience. Most of the time I can do what I need without e.g. classes, but sometimes I'll intentionally use a technique in a project just to learn it. I can't learn stuff if I don't have a use for it.
I'm still learning, so if I've got any part of the above wrong, please help me out.
"Pirate for it" was probably the wrong phrase. "Plan for it" was probably what you were thinking when your fingers did something else.
Thought I did so well on my phone. It kept auto correcting code to coffee. Maybe it was telling me something.
Yes, plan for it!